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Education
University of Wisconsin - Madison Madison, WI USA
Ph.D. in Animal Science (computational biology track) 09/2020 - 12/2023
University of Wisconsin - Madison Madison, WI USA
M.S., Computer Sciences 09/2021 - 05/2023
University of Florida Gainesville, FL USA
M.S., Animal Science 08/2018 - 08/2020
Huazhong Agricultural University Wuhan, P.R.China
B.S., Animal Science09/2014 - 07/2018
Work Experience
Cancer Molecular Therapeutics Program
Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California USA
- Postdoctoral Computational Biologist 01/2024 – Present
Department of Animal and Dairy Sciences
University of Wisconsin-Madison, Madison, Wisconsin USA
- Research Assistant 09/2020 – 12/2023
Department of Animal Sciences
University of Florida, Gainesville, Florida USA
- Research Assistant 08/2018 - 08/2020
- Teaching Assistant ANS6901 Applied Statistics in Animal Sciences (Materials) Fall 2019
Software Development
Publication
Angela G, Mariana S, Moana RF, Liu, L., Guilherme P, Edson GLT, Peñagaricano, F & Mario B. (2024). The metabolomic composition of the oviductal fluid is controlled by the periovulatory hormonal context in Bos indicus cows. Biology of Reproduction, ioae153.
Amorín, R.*, Liu, L.*, Moriel, P., DiLorenzo, N., Lancaster, P. A., & Peñagaricano, F. (2023). Maternal diet induces persistent DNA methylation changes in the muscle of beef calves. Scientific Reports, 13(1), 1587.
Sheftel, C. M., Liu, L., Field, S. L., Weaver, S. R., Vezina, C. M., Peñagaricano, F., & Hernandez, L. L. (2022). Impact of Fluoxetine Treatment and Folic Acid Supplementation on the Mammary Gland Transcriptome During Peak Lactation. Frontiers in Pharmacology, 13.
Liu, L., Amorín, R., Moriel, P., DiLorenzo, N., Lancaster, P. A., & Peñagaricano, F. (2021). Maternal methionine supplementation during gestation alters alternative splicing and DNA methylation in bovine skeletal muscle. BMC genomics, 22, 1-11.
Mezera, M. A., Li, W., Liu, L., Meidan, R., Peñagaricano, F., & Wiltbank, M. C. (2021).Effect of natural pre-luteolytic prostaglandin F2α pulses on the bovine luteal transcriptome during spontaneous luteal regression. Biology of Reproduction, 105(4), 1016-1029.
Field, S. L., Marrero, M. G., Liu, L., Peñagaricano, F., & Laporta, J. (2021). Histological and transcriptomic analysis of adipose and muscle of dairy calves supplemented with 5-hydroxytryptophan. Scientific Reports, 11(1), 9665.
Liu, L., Amorín, R., Moriel, P., DiLorenzo, N., Lancaster, P. A., & Peñagaricano, F. (2020). Differential network analysis of bovine muscle reveals changes in gene coexpression patterns in response to changes in maternal nutrition. BMC genomics, 21(1), 1-12.
Sigdel, A., Liu, L., Abdollahi‐Arpanahi, R., Aguilar, I., & Peñagaricano, F. (2020). Genetic dissection of reproductive performance of dairy cows under heat stress. Animal Genetics, 51(4), 511-520.
Louvandini, H., Corrêa, P. S., Amorín, R., Liu, L., Ieda, E. H., Jimenez, C. R., ... & Peñagaricano, F. (2020). Gestational and lactational exposure to gossypol alters the testis transcriptome. BMC genomics, 21, 1-11.
Talk
January 12, 2023
Talk at PAG (International Plant and Animal Genome Conference) 30, San Diego, California
July 26, 2021
Talk at ISAG 2021, Online, Virtual
Award & Scholarship
- Neal A. Jorgensen Genome Travel Awards, PAG 29, San Diego, CA
- 2019 ANS Department 2019 Top-up Award, University of Florida
- 2017 The CSC (China Scholarship Council) undergraduate study abroad scholarship
- 2016 National scholarship of P.R.China (undergraduate), Huazhong Agricultural University, China
- 2014-2015 Outstanding Undergraduate Award, Huazhong Agricultural University, China
Technical Skill
- Bioinformatics/Data: RNA-Seq, WGB-Seq, Bioconductor, Tidyverse, Pandas/NumPy/SciPy, scikit-learn, TensorFlow
- Programming Languages: Python, Java, R, Shell (Bash), SQL (MySQL), C++, JavaScript/HTML/CSS, MATLAB
- Frameworks: Django, Spring Boot, ReactJS, NodeJS, JUnit, CUDA, OpenMP
- Developer Tools: Git, Docker, Conda, Nextflow, Slurm, GCP, AWS (EC2, RDS, S3), Elasticsearch, Jira